How can I find the GC-content of a FASTA file using a Bash script? How to Calculate GC Content from a FASTA File Using a Bash Script In bioinformatics understanding the GC content of a DNA sequence is essential as it can provid 3 min read 22-10-2024 22
get first value of a dot separated string (Bash) How to Extract the First Value of a Dot Separated String in Bash In this article we will address a common problem faced by developers when working with strings 2 min read 22-10-2024 21
Converting metabollic model in matlab to CobraPy Converting Metabolic Models from MATLAB to Cobra Py In the world of computational biology metabolic models play a crucial role in understanding cellular metabol 3 min read 20-10-2024 22
Setting up an objective function takes a long time to run Optimizing Objective Function Setup Strategies for Faster Performance When working on optimization problems one common challenge is the long execution time requ 2 min read 19-10-2024 34
Rule Exception: Called Process Error Snakemake pipeline Understanding Rule Exception Called Process Error in Snakemake Pipeline When working with Snakemake pipelines you might encounter various errors that can disrup 2 min read 16-10-2024 30
How can I rearrange a CSV file with taxonomic data according to to a template list How to Rearrange a CSV File with Taxonomic Data According to a Template List Managing taxonomic data can be challenging especially when it comes to organizing i 2 min read 15-10-2024 31
Filter rows in an R tidy data frame based on same-column values that are located in different rows Filtering Rows in R Tidy Data Frames Based on Same Column Values in Different Rows Working with tidy data frames in R often involves filtering rows based on spe 2 min read 07-10-2024 29
How to search primers with primerTree within a specific taxa? Finding the Perfect Primers Searching within Specific Taxa using primer3 Plus Primer design is a crucial step in many molecular biology experiments and finding 2 min read 05-10-2024 26
how to find regional overlap between two dfs Finding Regional Overlap A Guide to Identifying Common Areas in Data Frames In data analysis its often crucial to identify overlaps between datasets This is par 2 min read 04-10-2024 28
BiomartException: Query ERROR for existing dataset in BioMart Bio Mart Exception Query ERROR for Existing Datasets Troubleshooting and Solutions You re working with Bio Mart a powerful tool for accessing biological data an 2 min read 04-10-2024 36
awk merging files where col value is in range Merging Files Based on Column Value Ranges with awk Lets say you have two files file1 txt and file2 txt and you want to merge them based on a specific column va 2 min read 03-10-2024 42
How to direct Biopython's Etools cache to a specified file instead of trying to generate at home/root? Directing Biopythons Etools Cache to a Custom Location Biopythons Etools module is a powerful tool for working with biological sequences It provides access to v 2 min read 03-10-2024 32
How do I download bowtie2 onto my macbook? Downloading Bowtie2 on Your Macbook A Step by Step Guide Bowtie2 is a powerful and widely used tool for aligning DNA sequences to a reference genome Its essenti less than a minute read 03-10-2024 30
Is there a way to run a snakemake rule remotely (e.g. on Google Batch) if one or more of its inputs are flagged as local? Running Snakemake Rules Remotely with Local Inputs Running Snakemake workflows remotely particularly on cloud platforms like Google Batch is a powerful way to l 3 min read 02-10-2024 50
Count the number of lines and characters in a file separated by a specific character Counting Lines and Characters in a File A Comprehensive Guide Have you ever needed to know the exact number of lines and characters in a file especially when de 2 min read 01-10-2024 42
Why can't I give a default value to params.fasta in main.nf of my new pipeline (Nextflow/nf-core) Understanding params fasta in Nextflow Pipelines Why Default Values Cant Always Be Set When creating a new Nextflow pipeline especially one based on the popular 2 min read 01-10-2024 35
Slingshot (Trajectory inference analysis ) Unraveling the Mysteries of Cell Lineage A Guide to Slingshot Trajectory Inference Analysis Understanding how cells differentiate and evolve over time is crucia 3 min read 01-10-2024 33
Error with BiocParallel. No barcodes files found No barcodes files found Error in Bioc Parallel Troubleshooting and Solutions When working with high throughput sequencing data and utilizing the Bioc Parallel p 2 min read 30-09-2024 33